Commands

• addbond: Adds a bond to the connectivity list
• addbonds: Adds a bond to the connectivity list
• ads: Changes atom drawing style for all/selected atoms
• afix: Refinement constraints
• arad: Apply Radii to all/selected atoms
• azoom: Changes the radii of all/given atoms
• brad: Adjusts the bond radii in the display
• calcfourier: Calculates Fourier map for current model.
• calcvoid: Calculates Voids and Channels.
• chiv: Chiral volume restraint
• compaq: Move atoms and fragments together
• conn: Maximum number of bonds
• constrain: Generic macro to generate constraints
• dang: Pairwise distance restraint
• delbond: Remove a particular bond
• delu: Rigid-bond APD restraint
• dfix: Distance restraint
• direction: Prints the current view direction
• eadp: Equal ADP constraint
• editatom: Brings up an edit window where the atom properties can be edited in ShelX format
• editmaterial: Change properties of a graphical material
• envi: Print the environment of a selected atom
• exyz: Constrain atoms to the same site
• file: Saves the current model to varios file formats
• fix: Fix occupancy, xzy or Uiso
• fixhl: Hydrogen atom names follow the parent atom
• flat: Restrain all selected atoms to lie in a plane
• free: Free occupancy, xyz or Uiso
• fvar: Link parameters through a free variable
• grad: Change the colour of the gradient background
• grow: Grow atoms with various options
• hklappend: Append reflections to the hkl file
• hkledit: Opens dialogue listing 'bad reflections'
• hklexclude: Reversibly exclude some named reflections
• hklstat: Prints detailed information about reflections
• hklview: Show reflections in a reciprocal space view
• htab: Search for hydrogen bonds and add them to the CIF
• importfrag: Import a molecular fragment, with various options!
• isor: Restrain the ADP towards being isotropic
• kill: Delete atoms, bonds or labels
• label: Add labels to atoms or bonds
• load: Load a previously saved item.
• lstsymm: List all symmetry operations for the current structure
• match: A whole lot of tools for matching and overlaying things
• matr: Orient the structure along cell axes
• mode: A lot of things can happen when Olex2 is in a mode
• mode fix xyz: Fixes the coordinates for subsequently clicked atoms
• mode grow: Display directions where the molecule can grow... and then do a lot with that!
• mode name: Naming mode. Powerful stuff!
• mode occu: Sets the occupancy for subsequently clicked atoms
• mode pack: Display the position of symmetry equivalent asymmetric units as tetrahedra
• mode pack: Set to which PART the selected atoms will belong
• mode split: Split or move atoms.
• molinfo: Calculate molecular volumes and surface area for selected atoms
• mpln: Find the best plane through the current selection
• MSDSView: Displays the Mean Square Displacement options.
• name: A bucket full of naming options
• OFile: A portable version for making pictures
• OFileDel: Delete the specified overlayed file
• OFileSwap: Select the active file when overlay is on
• omit: Omit reflections from the refinement. Either ranges, or explicitly named reflections.
• pack: Pack the structure, with many different options
• pict: Generate a bitmap image of the current structure
• picta: Creates a POVRAY file of the current view
• pictps: Make PostScript "ORTEP" style pictures
• picts: Generate a stereo picture
• pim: Helps with images where there are Metal-pi bonds
• pipi: Analysis for pi-pi interactions
• restrain: Generic macro for restraint generation
• rota: Rotate the molecule by a precice amount
• rrings: Find and restrain rings
• sadi: Apply the 'same distance' restraint
• same: Set up a "same" system of restraints
• save: Save things in Olex2 -- various things!
• scaleN: Extends the normal of one plane to touch another plane
• sel: The most overloaded command in Olex2! You need to know about this...
• sel atoms: Olex2 selection syntax concerning atoms
• sel bonds: Olex2 selection syntax concerning bonds
• sel bonds: Restrain a set of two bonds to be triangular with the provided parameters
• selfont: Set the font used for various objects
• sgen: Generate symmetry equivalent atoms
• sgs: Space Group Settings
• showp: Show only the named parts
• simu: Apply a "similar ADP" restraint
• sort: Sort the atom order in listings
• split: Split the selected atoms into to parts
• sump: Adding up occupancies to a fixed value
• xf.rn.ShareADP1: Generate a shared, rotated ADP constraint
• zoom: Get and Set the value of the current zoom level

All Available Caterories and Tags